Profiles2

Information for former members reflects past status/contacts, and may not currently apply. Magnus Andersson Pär Bjelkmar Viveca Lindahl Samuel Murail Özge Yoluk Torben Brömstrup Anders Gabrielsson Arina Gromova Anton Hanke Samira Yazdi Tyler Ha...

Postdoctoral FellowDepartment of Applied PhysicsKTH Royal Institute of Technology Email: akshay.sridhar@scilifelab.se Projects: Membrane Protein Modeling Ligand-Gated Ion Channels

PhD student Department of Medicine, Solna Karolinska Institutet Email : ali.narangifard@ki.se Projects : Skin Structure and Formation Publications : See Google Scholar Citations  for publication list.

Research Assistant

Postdoctoral FellowDepartment of Applied PhysicsKTH Royal Institute of Technology Team : Membrane Protein Modeling Email: andrea.pasquadibisceglie@scilifelab.se

Department of Applied PhysicsKTH Royal Institute of Technologyanton.jansen@scilifelab.se Project: During my PhD in Stockholm, Sweden, I have helped to implement a constant-pH molecular dynamics (CpHMD) algorithm in GROMACS. Furthermore,...

Researcher in BiophysicsKTH Royal Institute of Technology Email:  zhmurov@gmail.com Google Scholar: http://scholar.google.ru/citations?user=5t0deUYAAAAJ Projects:  GROMACS Development Ligand-Gated Ion Channels Education 2014 — PhD in Che...

PhD Student Department of Biochemistry and Biophysics Stockholm University Email :  bjorn.forsberg@dbb.su.se Project:  Cryo-Electron Microscopy Profile:  Google Scholar Background:  Björn has a background in physics, ...

PhD Student, Biophysics KTH Royal Institute of Technology Email: cabergh@kth.se Team: Integrative Structural Biology My work focuses on developing Markov state models as a method to study the function of large membrane proteins.

ResearcherDepartment of Biochemistry & BiophysicsStockholm University Email: chen.fan@scilifelab.se Google Scholar Team: Integrative Structural Biology

Researcher at ERCO Pharma Email : christian.wennberg@scilifelab.se Projects : Skin structure and formation Biography : Christian completed his PhD in the Lindahl group with a focus on the interactions between lipids and their surrounding environment. ...

Postdoctoral FellowDepartment of Biochemistry & BiophysicsStockholm University Projects : Membrane Protein Modeling - Transporter Dynamics

PhD Student Department of Biochemistry & Biophysics Stockholm University Email: dkimanius@g mail.com Projects:  Cryo-electron microscopy Dari is mainly  focused on method development  in Cryo-EM data refinement. He's been developing th...

Master's Student Department of Engineering Physics KTH Royal Institute of Technology Email:  emanuelh@kth.se Project:  Cryo-Electron Microscopy Education:  BSc in Medical Engineering Royal Institute of Technology, Sweden (2017)

Postdoctoral FellowDepartment of Applied PhysicsKTH Royal Institute of Technology Email: farzaneh.jalalypour@scilifelab.se Teams: Integrative Structural Biology GROMACS Development

Master's Student Department of Physics University of Bologna Email:  giulio.rosano@studio.unibo.it Project:  Ligand-Gated Ion Channels

Master's Student Molecular Techniques in Life Science Science for Life Laboratory, Sweden Email:  helen.kiik@scilifelab.se Project:  Ligand-Gated Ion Channels

Postdoctoral Scholar Department of Biochemistry & Biophysics Stockholm University Email:  e.jjordan12@gmail.com Projects: GROMACS Development GitHub:  ejjordan    

PhD Student, BiophysicsDepartment of Applied PhysicsKTH Royal Institute of Technology Project: Membrane-Protein Modeling , Ion Channel Gating , Modulation Email: koushik.choudhury@scilifelab.se

Researcher (Förskare) Email : laura.orellana@scilifelab.se Projects: Cryo-Electron Microscopy Ligand-Gated Ion Channels Background: My research focuses in the relationship between the structure, the dynamics and the function of ...

PhD StudentDepartment of Biochemistry & BiophysicsStockholm University Email:   linnea.axelsson@dbb.su.se Projects:  Cryo-Electron Microscopy Ligand-Gated Ion Channels Education: Master's degree in Molecular...

PhD Student Department of Biochemistry & Biophysics Stockholm University Email : marie.lycksell@scilifelab.se Projects:  Ligand-Gated Ion Channels Education: Master of Science in Molecular Science and Engineering, KTH Royal Institute ...

Researcher in BiophysicsGROMACS Development ManagerKTH Royal Institute of Technology Email:  mjab@kth.se Profile:  KTH Project: GROMACS development I manage the development team of the world's fastest biomolecular simulation engine, GROMACS (...

Master's Student Department of Engineering Physics KTH Royal Institute of Technology Email:  mlux@kth.se Project:  Ligand-Gated Ion Channels Education:  BSc in Engineering Physics KTH Royal Institute of Technology BSc in Business an...

PhD Student, BiophysicsDepartment of Applied PhysicsKTH Royal Institute of Technology Project group: Wetting, flow & pH My research project is mainly focused on molecular simulations aimed to investigate the physics underlying dynamic...

Master's Student Department of Applied Physics KTH Royal Institute of Technology Email:  pitapost@gmail.com Projects:  Membrane Protein Modeling - Modulation of Membrane Proteins by Small Molecules Biography: Panagiotis grew up in L...

Researcher Department of Applied Physics KTH Royal Institute of Technology Email :  pbauer@kth.se / paul.bauer@scilifelab.se/  paul.bauer.q@gmail.com  Projects: GROMACS Development Profiles: ORCID ID: 0000-0002-2268-0065 ...

Postdoctoral FellowDepartment of Applied PhysicsKTH Royal Institute of Technology Email: sebastian.wingberm@scilifelab.se Project: GROMACS development

Postdoctoral FellowDepartment of Applied PhysicsKTH Royal Institute of Technology Project: Membrane Protein Modeling Email: sergio.perez.conesa@scilifelab.se I am a Computational Chemist studying the allosterics and lipid interactions...

Master's Student Department of Biotechnology KTH Royal Institute of Technology Email: shinjiro@kth.se Project:  Ligand-Gated Ion Channels Education: Bachelor of Engineering in Mechanical Engineering Keio University, Japan (2017)

Master's Student School of Engineering Sciences in Chemistry, Biotechnology and Health KTH Royal Institute of Technology, Stockholm, Sweden Email:  stinabo@kth.se Project: Membrane-Protein Modeling

PhD StudentDepartment of Biochemistry & BiophysicsStockholm University Email:   urska.rovsnik@scilifelab.se Team: Integrative Structural Biology Education: MSc in Biochemistry, Department of Biochemistry and Biophysics, Stockholm University (...

Postdoctoral FellowDepartment of Applied PhysicsKTH Royal Institute of Technology Project: Membrane Protein Modeling Email: tanadet.pipatpolkai@scilifelab.se

Masters Student

PhD Student Department of Applied PhysicsKTH Royal Institute of Technology Email: yue.chen@scilifelab.se Project: Membrane Protein Modeling , GPCRs Description: I am currently working...

PhD student Department of Biochemistry and Biophysics Stockholm University Email:  wsygzyx@gmail.com Team: Integrative Structural Biology Online Personal page Blog Github Education 2012:  BSc, University of Science a...

Postdoctoral FellowDepartment of Applied PhysicsKTH Royal Institute of Technology Contact: Email: ahmad.elbahnsi@scilifelab.seLinkedin Project: Membrane Protein Modeling Molecular Mechanisms of Ion Channel Gating Modulation of...

PhD Student Department of Applied Physics KTH Royal Institute of Technology E-mail : annie .westerlund @gmail.com Projects:  Membrane Protein Modeling - Development of MD Simulation Analysis Tools Membrane Protein Modeling - Development...

Postdoctoral Scholar, Carl- Trygger Stipend Department of Biochemistry and Biophysics Stockholm University Email:   cblau@gwdg.de  / christian.blau@scilifelab.se Projects: Gromacs Development Cryo-Electron Microscopy  ...

Postdoctoral Scholar Department of Applied Physics KTH Royal Institute of Technology E-mail : lea.rems@scilifelab.se Projects: Membrane-Protein Modeling Biography: Lea was born in Novo mesto, a small historical town in the in southeastern...

Post-Doc

PhD Student oliver.fleetwood@gmail.com

Researcher stephanie.heusser@scilifelab.se

Researcher GROMACS Development Team Lead magnus.lundborg@scilifelab.se

Project worker sarah.mccomas@scilifelab.se

Calendars Click through to view our shared calendar  (external link here ) of upcoming meetings, important or interesting workshops, conferences, socials, and other events. Anyone subscribed to the group email list (tcblab@scilifelab.se , see...

Group meetings, social outings, relevant courses and deadlines, and other key dates are recorded in our shared calendar below. Please help out by keeping it up to date! External link to calendar. User Guide Add calendar to your Google account ...

These pages collect information that may be useful for all Molecular Biophysics Stockholm group members. Content can be navigated from the righthand sidebar. If something is missing, please add it. If something is wrong or outdated, please fix or remove...

How to navigate the tricky waters of bureaucracy. KTH and AlbaNova Stockholm University SciLifeLab

General Information Travel Booking and Billing With KTH-RES Note: All travel bookings, including taxis, must now be done through the VIA Egencia system to be eligible for reimbursement. Travel booking and reimbursement is done mainly through the...

Contacts and Services  Intranet: http://intranet.scilifelab.se/ . Administrator: Petra Lauritsch helps with mail accounts, access cards, telephones, etc. Care taker: Mats can help with more hands-on stuff (moving...

At Stockholm University, our group is in the Department for BIophysics and BIochemistry (DBB). Link to the DBB website. Travel With Stockholm University Book whatever possible using the BCD travel agency. Apply for a login at BCDtravel with Sylvia...

Introduction Here, we give a brief overview of the available resources and link to the specific pages with more in-depth information. First of all, let us explain some acronyms and jargon that you will encounter here throughout the pages. MBS...

HPC NAISS NAISS, the National Academic Infrastructure for Supercomputing in Sweden, is, roughly speaking, responsible to allocate computing times on Swedish HPC resources to scientists working at Swedish academic institutions. Except maybe for...

Introduction There are two main file systems available for users in the Molecular Biophysics Stockholm (MBS) group. They are the "nethome" NFS server (fs.biophysics.kth.se ) and the CephFS distributed file storage. The first one stores all the users'...

Introduction From January 2025 we no longer have any joint maintenance of our workstations, so while we try to provide some general guidelines and pointers for the transition, this information will become outdated at some point. Thus, if you...

Installing software Do I have to install the software? No, if your software is available in the Ubuntu software repository. Feel free to kindly ask in the Workstations stream in Zulip if it can be added to the default workstation setup. No,...

Common Machines (sll = .scilifelab.se, bphys = .biophysics.kth.se, tcblab = internal)  Name  Domain  OS  CPU  Usage/comment ldap bphys U24.04   LDAP server: ldap://ldap.biophysics.kth.sefreeIPA web UI...

Introduction Here we collect some information about our own cluster that is maintained by volunteers within the group. Help is very appreciated, so feel free to ask how you can help out. This could be anything, e.g. writing documentation, keeping...

Below are links to news and event pages about schools, conferences and workshops that might be worth keeping up to date. KTH SCI  (School of Engineering Sciences) KTH CSC  (School of Computer Science and Communication) SeRC  (Swedish e-science Re...

Email groups All members should be subscribed to our main email group (tcblab@scilifelab.se ), which also provides access to our shared calendar . Contact site-mbp@scilifelab.se  or a group leader (PI, lab manager, website...

Cake Club Every Friday at 15.00 it's Cake Club in the SciLifeLab Alfa 6 kitchen. Sign up on the list posted in the kitchen. Espresso Machine Everyone who uses the espresso machine should contribute to the maintenance and shopping of beans for...

Tutorials, how-to's and recommendations for PhD students! Note that it is reasonably easy for students of both SU and KTH to get credits for courses at either of the two, and Uppsala University. But always make sure that it is possible when signing up. KTH...

Some collected tips and guides for doing stuff. SSH Proxy Tired of using slow X-forwarding to access information that’s only available within the university network, like journal articles that KTH but not KI has access to? Use SSH as a proxy! Y...

Log in to access our internal site.

Open Science Framework (OSF ) is a web application for storing and sharing scripts, data, analysis and other project details. Group members are encouraged to document their projects, particularly completed/published work, within the Molecular Biophysics...

Plants at Gamma 3 South We have a number of plants in our office space on Gamma 3 south, a list of which can be found here: https://docs.google.com/document/d/1JxtsFAaEmw0_CrEw5Z_JmCEZEU4Bf5JOyPLW32dfkzM/edit?usp=sharing The plant...

To add or edit any content Log in via the link at the lower left corner of biophysics.se . Mouse over the site link ('Molecular Biophysics Stockholm') at top left and select 'Dashboard.' To post a news item From the Dashboard, select 'Posts'...

Present and past contributors

Postdoctoral FellowDepartment of Applied PhysicsKTH Royal Institute of Technology Team : Membrane Protein Modeling Email: adrien.schahl@scilifelab.se Biography: Adrien Schahl graduated from the University of Toulouse in 2020,...

ResearcherPDC Center for High Performance ComputingKTH Royal Institute of Technology Email:  avilla@kth.se Profiles: Google Scholar ORCID Linkedin Biography : Alessandra was educated as a chemistry at the University...

ResearcherDepartment of Applied PhysicsKTH Royal Institute of Technology Email: andrey.alekseenko@scilifelab.se Project: GROMACS Development Profiles: Google Scholar GitHub GitLab

PhD Student, BiophysicsKTH Royal Institute of Technology Email: antoni.marciniak@scilifelab.se Projects : Membrane Protein Modeling

PhD Student Department of Applied Physics KTH Royal Institute of Technology Email: darko.mitrovic@scilifelab.se Project: Membrane Protein Modeling , Transporter Dynamics Description: I am primarily interested in exploring...

PhD StudentDepartment of Biochemistry & BiophysicsStockholm University Email: emelia.karlsson@scilifelab.se Team: Integrative Structural Biology Biography: Emelia's work aims to contribute new insight into receptor allostery...

Professor erik.lindahl@scilifelab.se

Postdoctoral FellowDepartment of Applied PhysicsKTH Royal Institute of Technology Email: john.cowgill@scilifelab.se Teams: Membrane-Protein Modeling Integrative Structural Biology

PhD Student, BiophysicsKTH Royal Institute of Technology Email: lukas.mullender@scilifelab.se Team:  GROMACS Development

Postdoctoral FellowDepartment of Biochemistry & BiophysicsStockholm University Email: marta.bonaccorsi@scilifelab.se Projects : Membrane Protein Modeling - Transporter Dynamics

ResearcherDepartment of Applied PhysicsKTH Royal Institute of Technology E-mail:  muhammad.sadiq@scilifelab.se Projects:  GROMACS Development

Postdoctoral FellowDepartment of Applied PhysicsKTH Royal Institute of Technology Team : Integrative Structural Biology Email: nandan.haloi@scilifelab.se

PhD StudentDepartment of Biochemistry & BiophysicsStockholm University Email: olivia.anden@scilifelab.se Team:  Integrative Structural Biology

Researcher Department of Applied Physics KTH Royal Institute of Technology E-mail:   pettjoha@kth.se Projects:  GROMACS Development Profiles: ORCID GitHub

PhD Student, Biochemistry & BiophysicsStockholm University Email: samuel.eriksson@scilifelab.se Team:  Integrative Structural Biology

Systems Administrator Cryo-EM National Facility Stockholm University ERCO Pharma AB Email:  stefan.fleischmann@scilifelab.se Projects: Cryo-electron microscopy GROMACS development

PhD Student Computational Biophysics KTH Royal Institute of Technology Email : pszilard@kth.se Research Interests Algorithms & methods for accelerating molecular dynamics Parallelization & acceleration of molecular dynamics ...

PhD Student, BiophysicsKTH Royal Institute of Technology Email: tatiana.shugaeva@scilifelab.se Teams : Integrative Structural Biology GROMACS development

ResearcherDepartment of Applied PhysicsKTH Royal Institute of Technology E-mail:  yang.zhang@scilifelab.se Projects:  GROMACS Development Description: I am interested in developing computational tools (MD, ML, and HPC) to push...

PhD Student, BiophysicsKTH Royal Institute of Technology Email: yitian.hu@scilifelab.se Team: Wetting, flow & pH

Professor Wetting, Flow & pH Team Lead berk.hess@scilifelab.se

Professor Membrane Protein Modeling Team Lead lucie.delemotte@scilifelab.se

Senior Researcher Integrative Structural Biology Team Lead rebecca.howard@scilifelab.se

In addition to the positions below, we are always interested in hearing from motivated applicants at join-mbp@scilifelab.se . Research Projects in Integrative Structural Biology Visit the Teams page to learn more about our work and...

Our group members include researchers and developers from a range of disciplines. Preview two rotating members below, or click above for a complete directory.

Here you can find information on the members of each of the groups within our Stockholm Molecular Biophysics team, click on a profile to read more about each member. Hoping to be on this page one day? Keep an eye out for open positions  with us! ...

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Members of Molecular Biophysics Stockholm contribute to the development of several software tools, largely involved in simulations or structural modeling of biomolecules. GROMACS : a versatile package to perform molecular dynamics, i.e. simulate ...

Besides our lab, there are plenty of wonderful things in Stockholm.

Stockholm is built on 14 islands connected by 57 bridges creating a city surrounded by water so clean that you can go swimming or fishing even in the very heart of the city.

Stockholm has an excellent public transportation network with trains, subways, buses, and even boats. The subway system is said to be the world’s longest art exhibit as almost all of its stations are decorated by artists.

Almost everyone in Stockholm speaks English and is happy to do so with foreigners. You are not expected to learn the language but if you want to, the city offers free Swedish courses.

Every year in December, the Nobel Prize award ceremony takes place at Stockholm's City Hall. You get a chance of meeting the Laureates at events organized during the Novel week.

Fika is Swedish for a coffee break that’s more about socializing than drinking coffee. Fika is an important part of everyday life and something sweet is always welcome.

Summers in Stockholm can be glorious with up to 21h of light. So get you sun in before winter where the capital sees a mere six hours of sunlight on the shortest day.

Stockholm is an amazing city to live in, but it can be somewhat tricky to find accommodation. Here are some tips for you:

Currently active research and development

Our group is responsible for a versatile software package enabling researchers worldwide to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.

This project studies molecular processes in dynamic wetting, including how they affect larger-scale systems and interface with theoretical models.

The Delemotte Lab models the molecular basis for excitability and signal transduction in membrane proteins, as well as developing new protocols for sampling and analysis of molecular dynamics.

How does membrane potential activate pacemaker channels of the heart? What is the molecular basis of sodium channels inactivation, the process, which prevents prolonged depolarization of membranes?

How can one use various methods of data analysis to extract physiologically relevant information from a large ensemble of protein conformations observed in simulations?

How can one use enhanced sampling techniques to understand biological phenomena, characterize the free energy and the kinetics of biomolecular processes?

How do GPCRs activate? How is the ligand binding site coupled to the intracellular domain?

How is substrate recognized in sugar porters? What drives the changes of these proteins through their alternating access mechanism?

How are membrane proteins modulated by lipids and/or drugs?

Structure, function, and simulation methods are applied to characterize biomolecules, with a frequent focus on allosteric modulation of ligand-gated ion channels.

Welcome to the homepage of Molecular Biophysics Stockholm, an interdisciplinary team of researchers and developers in the biomolecular sciences, based at Sweden's Science for Life Laboratory.

Visiting, post, and email contacts